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  <front>
    <journal-meta>
      <journal-id journal-id-type="iso-abbrev">Pharmacophore</journal-id>
      <journal-id journal-id-type="publisher-id">pharmacophorejournal.com</journal-id>
      <journal-id journal-id-type="publisher-id">Pharmacophore</journal-id>
      <journal-title-group>
        <journal-title>Pharmacophore</journal-title>
      </journal-title-group>
      <issn pub-type="epub">2229-5402</issn>
    </journal-meta>
    <article-meta>
      <article-id pub-id-type="publisher-id">pharmacophorejournal.com-6980</article-id>
      <article-id pub-id-type="doi">10.51847/i178ALlztD</article-id>
      <article-categories>
        <subj-group subj-group-type="heading">
          <subject>Original research</subject>
        </subj-group>
      </article-categories>
      <title-group>
        <article-title>Do Self-Driving Laboratories Accelerate Discovery or Automate Uncertainty, Bias, and Irreproducible Decisions?</article-title>
      </title-group>
                    <contrib-group>
                      <contrib contrib-type="author">
              <name>
                <surname>Hao</surname>
                <given-names>Chen</given-names>
              </name>
                              <xref rid="aff1" ref-type="aff">1</xref>
                                                            <xref rid="cor1" ref-type="corresp" />
                          </contrib>
                      <contrib contrib-type="author">
              <name>
                <surname>Fang</surname>
                <given-names>Liu</given-names>
              </name>
                              <xref rid="aff1" ref-type="aff">1</xref>
                                        </contrib>
                      <contrib contrib-type="author">
              <name>
                <surname>Lin</surname>
                <given-names>Zhao</given-names>
              </name>
                              <xref rid="aff2" ref-type="aff">2</xref>
                                        </contrib>
                      <contrib contrib-type="author">
              <name>
                <surname>Zhang</surname>
                <given-names>Wei</given-names>
              </name>
                              <xref rid="aff3" ref-type="aff">3</xref>
                                        </contrib>
                  </contrib-group>
                  <aff id="aff1">
            <label>1</label>Department of Self-Driving Labs and Discovery Acceleration, Faculty of Pharmacy, Zhejiang University, Hangzhou, China.
          </aff>
                  <aff id="aff2">
            <label>2</label>Department of Uncertainty and Bias in Automated Labs, Faculty of Pharmaceutical Sciences, Nanjing University, Nanjing, China.
          </aff>
                  <aff id="aff3">
            <label>3</label>Department of Irreproducible Decisions in Autonomous Discovery, Faculty of Pharmacy, University of Melbourne, Melbourne, Australia.
          </aff>
                          <author-notes>
            <corresp id="cor1">
              <bold>Address for correspondence:</bold> Prof. Wael Abu Dayyih, Department of
              Pharmaceutical Chemistry, Faculty of Pharmacy, Mutah University, Al-Karak 61710, Jordan.
                              E-mail: <email xlink:href="chen.hao@zju.edu.cn">chen.hao@zju.edu.cn</email>
                          </corresp>
          </author-notes>
                    <pub-date pub-type="epub">
        <day>28</day>
        <month>08</month>
        <year>2026</year>
      </pub-date>
      <volume>17</volume>
      <issue>4</issue>
      <fpage>146</fpage>
      <lpage>156</lpage>
      <permissions>
        <copyright-statement>
          Copyright: &#x000a9; 2026 Pharmacophore
        </copyright-statement>
        <copyright-year>2026</copyright-year>
        <license>
          <ali:license_ref xmlns:ali="http://www.niso.org/schemas/ali/1.0/"
            specific-use="textmining" content-type="ccbyncsalicense">
            https://creativecommons.org/licenses/by-nc-sa/4.0/</ali:license_ref>
          <license-p>This is an open access journal, and articles are distributed under the terms of
            the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 License, which allows
            others to remix, tweak, and build upon the work non-commercially, as long as appropriate
            credit is given and the new creations are licensed under the identical terms.</license-p>
        </license>
      </permissions>
      <abstract>
        <title>A<sc>BSTRACT</sc></title>
        <p>Self-driving laboratories are increasingly presented as a route to faster, more systematic discovery by coupling algorithmic experiment selection with automated synthesis, testing, and analysis. Yet the same closed-loop structure that can improve experimental efficiency can also repeat hidden biases, amplify measurement error, misinterpret model confidence, and convert poorly specified objectives into reproducible but scientifically weak decisions. This realist review asks not whether laboratory autonomy works in the abstract, but what works, for whom, under which technical and organizational conditions, through which mechanisms, and with what outcomes. The review develops an initial programme theory, searches iteratively for explanatory evidence, and organizes findings as context–mechanism–outcome configurations across design, synthesis, testing, analysis, uncertainty management, and pharmaceutical translation. The synthesis identifies four conditional acceleration mechanisms: faster feedback between prediction and measurement, information-efficient experiment selection, consistent execution of supported procedures, and cumulative learning from structured experimental records. It also identifies four counter-mechanisms: reinforcement of biased or narrow data, exploitation of measurement noise and proxy objectives, propagation of miscalibrated uncertainty, and loss of reproducibility through brittle interfaces or underspecified protocols. The central contribution is a proposed staged-autonomy interpretation in which decision authority expands only when the relevant objective, assay, instrumentation, data lineage, uncertainty estimates, failure recovery, and human escalation pathways have demonstrated adequate reliability. The available evidence remains strongest for bounded chemical and materials tasks and substantially weaker for routine pharmaceutical decision-making, biological complexity, independent replication, and long-duration operation. Self-driving laboratories may accelerate discovery, but acceleration is not an intrinsic property of autonomy; it is an outcome produced only when enabling contexts activate reliable scientific mechanisms while safeguards interrupt error-amplifying feedback.</p>
      </abstract>
      <kwd-group>
                <kwd>Self-driving laboratories</kwd>
                <kwd>Realist review</kwd>
                <kwd>Closed-loop experimentation</kwd>
                <kwd>Laboratory automation</kwd>
                <kwd>Active learning</kwd>
                <kwd>Uncertainty quantification</kwd>
              </kwd-group>
    </article-meta>
  </front>
</article>